Season 2, Episode 21 – Aired: 5/19/1999
Ch... Ch... Ch... Changes

All of the gang's lives go through changes. After Andie begins seeing her dead brother Tim in the last episode, Jack and Pacey agree to call Mr. McPhee not realizing that he'll want her to be treated in Providence, not Capeside. All are stunned at the new changes and Andie and Pacey must decide if Andie's mental wellness is more important than being together. Jack also must decide whether or not to go with Andie or stay. Dawson while helping Mr. Potter extend the Ice House interviews him for a film project about his changed life, but has it changed? Jen decides to make a change so she calls her mother and inquires about returning home or visiting and is told it is inconvenient right now.

Season 2, Episode 22 – Aired: 5/26/1999
Parental Discretion Advised

As the WB commercial says... "Children must pay for the sins of their fathers."

Dawson sees Mr. Potter dealing drugs and he is unsure whether or not to tell Joey or leave things looking good. Mr. Witter has to stake out the Ice House because the Capeside police department believes that Mr. Potter is back to his usual tricks. When the gang is studying in the Ice House, one of Mr. Potter's customers lights it on fire, making Mr. Witter more suspicious and Dawson's conflict greater. Gale tells Mitch about her new job offer in Chicago and her discussion to go for it. Pacey becomes depressed and his achievement level decreases, now that Andie is gone, which his father teases him for. Finally Mr. Witter does realize her importance and that he has been a bad father. Jack becomes worried that Jen is suicidal when she doesn't immediately leave the burning Ice House. But later, Grams and Jen reconcile, causing Jen to move back in taking Jack also.

Season 3, Episode 3 – Aired: 10/13/1999
None of the Above

Dawson is stunned when Eve presents him with a sneak peak at the PSAT test and everyone is tempted to cheat including Joey, whose scholarship is dependent on her SAT scores, and Andie, who is desperately fighting for acceptance to Harvard. But when the test is stolen, it's Pacey that Dawson accuses since he sees Pacey slipping back to his old ways. Meanwhile, Jack is insistent that the football team is purposely beating him down because he is gay.

Season 3, Episode 4 – Aired: 10/20/1999
Home Movies

Father and son are at odds when Dawson moves forward with a news piece for his mom's Philadelphia station using Mitch's star player, Jack, as his subject matter even though Mitch is vehemently opposed. Meanwhile, Joey and Pacey find themselves in cahoots when they must pay the price for ditching class; Andie jumps to conclusions and panics about the reasons Principal Green wants to meet with her; and Jen goes to great lengths to remove herself as head cheerleader but is shocked at the end results.

Season 3, Episode 7 – Aired: 11/17/1999
Escape from Witch Island

In a bone-chilling installment, Dawson recruits Joey, Pacey and Jen to be his guerilla crew on a documentary for history class about Witch Island, a local spot shrouded in mystery for its reputation for being haunted by witches. They are haunted by tall tales of witches and love lost that has Dawson and Joey questioning their own romance and Jen and Pacey considering a new kind of friendship. Back at school, Andie takes her job on the school disciplinary committee a little too seriously when she tries taking back the halls of Capeside.

Season 3, Episode 8 – Aired: 11/24/1999
Guess Who's Coming to Dinner

When Jen's mom unexpectedly arrives in Capeside on Thanksgiving morning, Dawson confronts her about her secret past, and makes a decision to help bridge the gap between the estranged mother and daughter. Meanwhile, Jen continues to pursue a new type of friendship with Pacey, and Mitch and Gale make known the future of the Leery family.

Season 3, Episode 11 – Aired: 1/12/2000
Barefoot at Capefest

Dawson experiences an identity crisis when Principal Green's daughter Nikki emerges as another aspiring young director, and Joey experiences her own crisis when Dawson won't open up to her about the pain of his parents' divorce. Meanwhile, Jack's first efforts to hit on another guy are rebuffed, Pacey and Andie uncomfortably find themselves sharing the same after school activity, and Jen realizes that she may have passed up the chance at something special with Henry.

Season 3, Episode 12 – Aired: 1/19/2000
A Weekend in the Country

Joey's friends and their families work together to make sure that the opening of Potter's Bed & Breakfast is a success and that she and Bessie don't lose everything they have after Pacey surprises them with a visit from a prestigious travel critic. Throughout the weekend, Jen admits her concerns to Grams about getting close to Henry; Jack considers moving back home after hearing Andie's loving plea; and Dawson tries to understand the connection between his parents even after their divorce.

Season 3, Episode 15 – Aired: 2/9/2000
Crime and Punishment

Joey is chosen to be part of a group of students to paint a school mural, but when hers is defaced before the unveiling, Dawson offers words of encouragement while Pacey takes action and risks suspension when he goes in search of the culprit. Meanwhile, when Andie's PSAT scores rank among the best in the country, she gambles with everything she has worked for and comes clean to Principal Green about the previously stolen test; and Pacey moves in with Deputy Doug when their sister and her kids move back into the Witter house.

Season 3, Episode 16 – Aired: 2/16/2000
To Green, With Love

Joey relies on the support of Pacey and A.J. to rally the students in protest against the school superintendent after he forces Principal Green to resign for expelling the student who destroyed Joey's mural. Meanwhile, Dawson and Gale both go back to their respective places in back and in front of the camera to produce a piece about the ongoing school protest which ruffles more than a few feathers of the school board hierarchy.

Season 3, Episode 19 – Aired: 4/26/2000
Stolen Kisses

Dawson invites Joey, Andie and Pacey to spend Spring Break in the mountains at his aunt's home, but the trip is filled with tension as Joey and Pacey continue to battle about their feelings for each other and Andie becomes intrigued with the gang's childhood friend Will who is visiting. Meanwhile, back in town, Jen becomes surprisingly territorial when another woman flirts with Henry.

Season 3, Episode 20 – Aired: 5/3/2000
The Longest Day

In a story that replays the same day's activities from three different perspectives (as in the 1999 movie Go), Joey and Pacey vacillate on the ways to tell Dawson about their feelings for each other. But when the truth does come out, Dawson's reaction is the one they hoped they wouldn't get. Meanwhile, Andie, who thought she was over Pacey enough to date, accepts a date with Capeside visitor Will, but their first date is ruined when she also learns about Joey and Pacey.

Season 3, Episode 23 – Aired: 5/24/2000
True Love

After an emotional day filled with love, tears and wedding vows, Joey ultimately must choose between her love for Dawson and her new feelings for Pacey. Across town, Grams talks about love and regret with Jen, while Jack and Andie make a decision to drive all night so that Jen can see Henry one last time.

Season 4, Episode 2 – Aired: 10/11/2000
Failing Down

Joey is looking for a new job and gets one at the Yacht Club pretending to know a very influential family. She is tricked by her boss's son Drue, who discovers her lies. Mitch (now also a counselor at the school) tells Pacey he's not going to graduate unless he makes up for his bad grades. Pacey doesn't want Joey to know, but Mitch tells Dawson, who tells Joey, showing that he still cares about Pacey. Pacey and Joey have a fight and Pacey admits he needs help.

Season 4, Episode 3 – Aired: 10/18/2000
The Two Gentlemen of Capeside

Pacey is happy for his good grades, and decides to sail for celebration. Dawson, Joey and Drue are assigned together for a project and Joey can't go with him. Instead, Pacey takes Jen with him. What they didn't know is that a huge storm was coming and suddenly they have to face it. Andie is having an interview with Drue's mom for college, but her medical records get in her way. Mrs. Valentine worries about Andie's mental stability and denies her the spot. When the storm gets bigger, Andie takes control of the situation and guides everybody to rescue Jen and Pacey, who admit to each other their biggest regrets in life. Jen regrets never being in love, despite her feelings for Henry, and Pacey regrets the destruction of his friendship with Dawson. Dawson and Joey go on a small boat to rescue them and Dawson saves Pacey's life. He apologizes to Dawson for all his attitude over the past months.

Season 4, Episode 6 – Aired: 11/8/2000
Great Xpectations

Andie gets accepted into Harvard in advance, but accomplishing what should be the biggest thing in her life doesn't exactly makes her happy. She decides to explore different paths in her life by going to a rave. In the party, Drue gives Jen drugs and Andie ends up with them and takes them. They have a reaction with her anti-depressives which makes a disastrous combination and almost leads her to death. Mitch and Gale decide to keep their baby and things get awkward during the celebration when Gretchen brings Pacey and Joey with her.

Season 4, Episode 7 – Aired: 11/15/2000
You Had Me at Goodbye

While Andie is recovering from her near-fatal drug overdose at the party Jack blames Jen for the whole incident and is not talking to her. Jen blames the deranged Drue for her life falling apart when he turns Grams and the whole town against Jen by telling everyone that they intentially gave Andie the drugs. After Andie comes home from the hospital her dad tells her it would be better if she went to spend the rest of the year in Italy with her aunt since she already has the credits required for an early graduation. Andie decides to go and plans a goodbye dinner with the whole gang. She tells them how important life is and not to waste valuable time with useless fights between natural best friends. Jack and Jen get things straight and Andie plays a little trick to bring Dawson and Pacey together.